Publications

Thesis

Strukturelle Analyse web-basierter Dokumente, PhD Thesis
Dehmer M.
TU-Darmstadt, 2005
1 Bib
Schrankensätze in der analytischen Theorie der Polynome, Diploma Thesis
Dehmer M.
UGH-Siegen, 1998
2 Bib

Books

Strukturelle Analyse Web-basierter Dokumente, Gabler Edition Wissenschaft
Dehmer M.; Editors: Lehner F., Bodendorf F.
Gabler Edition Wissenschaft, Deutscher Universitätsverlag; Series: Multimedia und Telekooperation, 2006
3 Link
Bib
Die analytische Theorie der Polynome. Nullstellenschranken für komplexwertige Polynome
Dehmer M.
Weissensee-Verlag, Berlin, 2004
4 Link
Bib

Books (Edited and Co-edited)

Frontiers in Data Science
Dehmer M., Emmert-Streib F.
CRC, 2017
5
Computational Network Analysis with R: Applications in Biology, Medicine and Chemistry
Dehmer M., Shi Y., Emmert-Streib F.
Wiley-Blackwell, 2016
6 Link
Big Data of Complex Networks
Dehmer M., Emmert-Streib F., Holzinger A., Pickl S.
CRC, 2016
7 Link
Mathematical Foundations and Applications of Graph Entropy
Dehmer M., Chen Z., Li X., Shi Y., Emmert-Streib F.
Wiley-Blackwell, 2016
8 Link
Quantitative Graph Theory: Theoretical Foundations and Applications
Dehmer M., Emmert-Streib F.
CRC Press, 2014
9 Link
Advances in Network Complexity
Dehmer M., Mowshowitz A., Emmert-Streib F.
Wiley-Blackwell, 2013
10 Link
Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data
Emmert-Streib F., Dehmer M.
Wiley-Blackwell, 2013
11 Link
Statistical and Machine Learning Approaches for Network Analysis
Dehmer M, Basak S. C.
Wiley Series in Computational Statistics, Wiley, 2012
12 Link
Statistical Modelling of Molecular Descriptors in QSAR/QSPR
Dehmer M., Varmuza K., Bonchev D.
Wiley-VCH, 2012
13 Link
Bib
Towards an Information Theory of Complex Networks: Statistical Methods and Applications
Dehmer M., Emmert-Streib F., Mehler A.
Birkhäuser Publishing, 2011
14 Link
Bib
Applied Statistics for Network Biology: Methods in Systems Biology
Dehmer M., Emmert-Streib F., Graber A., Salvador A.
Wiley-VCH, 2011
15 Link
Bib
Structural Analysis of Complex Networks
Dehmer M.
Birkhäuser Publishing, 2010
16 Link
Bib
Medical Biostatistics for Complex Diseases
Emmert-Streib F., Dehmer M.
Wiley-VCH Publishing, 2010
17 Link
Bib
Analysis of Complex Networks: From Biology to Linguistics
Dehmer M., Emmert-Streib F.
Wiley-VCH Publishing, 2009
18 Link
Bib
Analysis of Microarray Data: A Network-based Approach
Emmert-Streib F., Dehmer M.
Wiley-VCH Publishing, 2008
19 Link
Bib
Information Theory and Statistical Learning
Emmert-Streib F., Dehmer M.
Springer, 2008
20 Link
Bib

Proceedings Editor

Proceedings of the 2008 International Conference on Information Theory and Statistical Learning (ITSL’08)
Dehmer M., Drmota M., Emmert-Streib F.
CSREA Press, 2008
21 Bib
Proceedings of the 2007 International Conference on Machine Learning: Models, Technologies and Applications (MLMTA’07)
Arabnia H. R., Dehmer M., Emmert-Streib F.
CSREA Press, 2007
22 Bib

Books (Associate Editor)

Proceedings of the 2007 International Conference on Scientific Computing (CSC’07)
Arabnia H. R. et al.; Dehmer M. (Associate Editor)
CSREA Press, 2007
23 Bib
Proceedings of the 2007 International Conference on Genetic and Evolutionary Methods (GEM’07)
Arabnia H. R. et al.; Dehmer M. (Associate Editor)
CSREA Press, 2007
24 Bib
Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology
Arabnia H. R., Valafar H.; Dehmer M. (Associate Editor),
Las Vegas, Nevada, USA, 2006, CSREA Press
25 Bib

Books (Series Editor)

Machine Learning Approaches in Bioinformatics
Meller J., Nowak W.; Emmert-Streib F., Dehmer M. (Series Editors)
Peter Lang Publishing, 2007
26 Link
Bib

Book Chapter

What ist Quantitative Graph Theory? In: Dehmer M., Emmert-Streib F., (Editors): Quantitative Graph Theory: Theoretical Foundations and Applications
Dehmer M., Kraus V., Emmert-Streib F., Pickl S.
CRC Press, 2014
27 Link
The Uniqueness of Graph Invariants: Classical and Recent Results. In: Gutman I. et al. (Editors): Topics in Chemical Graph Theory
Dehmer M., Dobrynin A. A.
Mathematical Chemistry Monographs, 2014, in press
28
Multi-touch Graph-Based Interaction for Knowledge Discovery on Mobile Devices: State-of-the-Art and Future Challenges. In: Holzinger, A., Jurisica, I. (Eds.): Interactive Knowledge Discovery and Data Mining
Holzinger, A., Ofner, B., Dehmer, M.
Springer Lecture Notes in Computer Science LNCS 8401, Berlin, Heidelberg: Springer, 2014, 241-254
29 Link
On Terrain Coverage Optimization by Using a Network Approach for Universal Graph-Based Data Mining and Knowledge Discovery, In: Slezak D., Tan A. H., Peters J. F., Schwabe L. (Editors): Brain Informatics and Health 2014, Warsaw, Poland
Preuß M., Dehmer M., Pickl S., Holzinger H.
Springer Lecture Notes in Computer Science, Vol. 8609, 2014, 564-573
30 Link
On Comparability Graphs. In: Basak S. C., Restrepo G., Villaveces J. L. (Editors): Advances in Mathematical Chemistry
Dehmer M., Sivakumar L.
Bentham Publishing, 2014, in press
31
Overview of Public Cancer Databases, Resources, and Visualization Tools. In: Emmert-Streib F., Dehmer M. (Editors): Statistical Diagnostics for Cancer: Analyzing High-Dimensional Data
Emmert-Streib F., De Matos Simoes R., Tripathi S., Dehmer M.
Wiley-Blackwell, 2013, 27-40
32 Link
On Graph Entropy Measures for Knowledge Discovery from Publication Network Data. In: Cuzzocrea A., Kittl C., Simos D. E., Weippl E., Xu L. (Ed.): Availability, Reliability, and Security in Information Systems and HCI (Lectures Notes in Computer Science)
Holzinger, A., Ofner B, Stocker, C., Valdez A. C., Schaar A. K., Ziefle M., Dehmer, M.
Springer, Vol. 8127, 2013, 354-362
33 Link
Big complex biomedical data: Towards a taxonomy of data. In: Obaidat M. S., et al. (Editors): Springer Communications in Computer and Information Science
Holzinger, A., Stocker, C., Dehmer, M.
Springer, 2013, accepted
34
Comparing Biological Networks: A Survey on Graph Classifying Techniques. In: Csukás B., Prokop A.: Systems Biology: Integrative Biology and Simulation Tools
Müller L., Dehmer M., Emmert-Streib F.
Springer, 2013, in press
35
On Aspects of the Degeneracy of Topological Indices. In: Enachescu F., Filip F. G., Iantovics B. (Editors): Advanced Computational Technologies
Dehmer M., Varmuza K.
Romanian Academy Press, 2012, 99-107
36
On Measuring the Complexity of Sets of Graphs Using Graph Entropy. In: Enachescu F., Filip F. G., Iantovics B. (Editors): Advanced Computational Technologies
Dehmer M., Mowshowitz A.
Romanian Academy Press, 2012, 176-184
37 Bib
Network-based Methods for Computational Diagnostics by Means of R. In: Trajanoski Z. (Editor): Computational Medicine
Müller L., Dehmer M., Emmert-Streib F.
Springer, 2012, 185-197
38 Link
On Distance-Based Entropy Measures. In: Gutman I., Furtula B. (Editors): Distance in Molecular Graphs - Theory
Dehmer M., Sivakumar L., Varmuza K.
Mathematical Chemistry Monographs, 2011, 49-70
39 Link
Altenburg, Wiener, and Hosoya Polynomials. In: Gutman I., Furtula B. (Editors): Distance in Molecular Graphs - Theory,
Gutman I., Zhang Y., Dehmer M., Ilić A.
Mathematical Chemistry Monographs, 2011, 49-70
40 Link
Quantifying Structural Complexity of Graphs: Information Measures in Mathematical Chemistry. In: Putz M. (Editor): Quantum Frontiers of Atoms and Molecules
Dehmer M., Emmert-Streib F. Tsoy R. Y., Varmuza K.
Nova Publishing, 2011, 479-497
41 Link
Bib
Recent Developments on Information-theoretic Descriptors to Analyze Networks. In: Gutman I., Furtula B. (Editors): Novel molecular Structure Descriptors - Theory and Applications I
Dehmer M., Graber A.
Mathematical Chemistry Monographs, Vol. 8, 2010, 21-38
42 Bib
Mining Graph Patterns in Web-based Systems: A Conceptual View. In: Mehler A., Sharoff S., Rehm G., Santini M. (Editors): Genres on the Web: Computational Models and Empirical Studies
Dehmer M., Emmert-Streib F.
Springer, 2010, 237-253
43 Bib
Detecting Pathological Pathways of a Complex Disease by a Comparative Analysis of Networks. In: Emmert-Streib F., Dehmer M. (Editors): Analysis of Microarray Data: A Network-based Approach
Dehmer M., Emmert-Streib F.
Wiley-VCH Publishing, 2008, 285-303
44 Bib

Journal Publications

New Inequalities Network Distance Measures by Using Graph Spectra
Dehmer M., Pickl S., Shi Y., Yu G.
Discrete Applied Mathematics, 2016, accepted
45 Link
Impact Factor:
0.722
A Conjecture Regarding the Extremal Values of Graph Entropy Based on Degree Powers
Das K. Ch., Dehmer M.
Entropy, 2016, Vol. 18 (183)
46 Link
Impact Factor:
1.743
The process of analyzing data is the emergent feature of data science
Emmert-Streib M., Moutari S., Dehmer M.
Frontiers in Genetics, 2016, Vol. 7 (12)
47 Link
Impact Factor:
3.92
Against Dataism and for Data Sharing of Big Biomedical and Clinical Data with Research Parasites
Emmert-Streib M., Dehmer M., Yli-Harja O.
Frontiers in Genetics, 2016, Vol. 7 (154)
48 Link
Impact Factor:
3.92
Fifty Years of Graph Matching, Network Alignment and Network Comparison
Emmert-Streib F., Dehmer M., Shi Y.
Information Sciences, 2016, Vol. 346–347, 180–197
49 Link
Impact Factor:
3.364
Sharp Upper Bounds for the Balaban Index of Bicyclic Graphs
Chen Z., Dehmer M., Shi Y., Yang H.
MATCH Commun. Math. Comput. Chem., Vol. 75 (1), 2016, 105-128
50 Link
Impact Factor:
3.858
Comparison between the zeroth-order Randic index and the sum-connectivity index
Das K. Ch., Dehmer M.
Applied Mathematics and Computation, 2016, Vol. 274, 585–589
51 Link
Impact Factor:
1.345
Degree-Based Entropies of Networks Revisited
Cao S., Dehmer M.
Applied Mathematics and Computation, Vol. 261, 2015, 141-147
52 Link
Impact Factor:
1.345
Bounds for degree-based Network Entropies
Chen Z., Dehmer M., Shi Y.
Applied Mathematics and Computation, Vol. 265, 2015, 983-993
53 Link
Impact Factor:
1.345
Entropy of Weighted Graphs with Randic Weights
Chen Z., Dehmer M., Emmert-Streib F., Shi Y.
Entropy, Vol. 17 (6), 2015, 3710-3723
54 Link
Impact Factor:
1.502
Connections Between Generalized Graph Entropies and Graph Energy
Dehmer M., Li X., Shi Y.
Complexity, 2015, Vol. 21, 35-41
55 Link
Impact Factor:
3.514
Discrimination Power of Polynomial-based Descriptors for Graphs by Using Functional Matrices
Dehmer M., Emmert-Streib F., Shi Y., Stefu M., Tripathi S.
PLoS ONE, Vol. 10 (10), 2015, e0139265
56 Link
A Method for Inferring Inequalities for Probability Values Applied to Complex Networks
Dehmer M., Shi Y.
Complexity, 2015, Vol. 21, 113–115
57 Link
Impact Factor:
3.514
Collaborative Risk Management for National Security and Strategic Foresight
Dehmer M., Meyer-Nieberg S., Mihelcic G., Pickl S., Zsifkovits M.
EURO Journal on Decision Processes, Vol. 3 (3), 2015, 305-337
58 Link
Encoding Structural Information Uniquely With Polynomial-based Descriptors by Employing The Randic Matrix
Dehmer M., Moosbrugger M., Shi Y.
Applied Mathematics and Computation, Vol. 268, 2015, 164-168
59 Link
Impact Factor:
1.345
Graph Distance Measures Based on Topological Indices Revisited
Dehmer M., Emmert-Streib F., Shi Y.
Applied Mathematics and Computation, Vol. 266, 2015, 623-633
60 Link
Impact Factor:
1.345
Structural Analysis of Treatment Cycles Representing Transitions Between Nursing Organizational Units Inferred from Diabetes
Dehmer M., Kurt Z., Emmert-Streib F., Them C., Schulc E., Hofer S.
PLoS ONE, Vol. 10 (6), 2015, e0127152
61 Link
A Comparative Analysis of the Tanimoto Index and Graph Edit Distance for Measuring the Topological Similarity of Trees
Dehmer M., Varmuza K.
Applied Mathematics and Computation, Vol. 259, 2015, 242-250
62 Link
Impact Factor:
1.345
Discrimination Power of Graph Measures based on Complex Zeros of The Partial Hosoya Polynomial
Dehmer M., Shi Y., Mowshowitz A.
Applied Mathematics and Computation, Vol. 250 (1), 2015, 352-355
63 Link
Impact Factor:
1.345
Biological networks: The microscope of the 21st century?
Emmert-Streib F., Dehmer M.
Frontiers in Genetics, 2015, Vol. 6 (307)
64 Link
Impact Factor:
3.92
Novel inequalities for generalized graph entropies - Graph energies and topological indices
Li X., Qin Z., Wei M., Gutman I., Dehmer M.
Applied Mathematics and Computation, Vol. 259, 2015, 470-479
65 Link
Impact Factor:
1.345
On the Distance Based Graph Entropies
Ilic A., Dehmer M.
Applied Mathematics and Computation, Vol. 269, 2015, 647-650
66 Link
Impact Factor:
1.345
The Hosoya entropy of a graph
Mowshowitz A., Dehmer M.
Entropy, Vol. 17 (3), 2015, 1054-1062
67 Link
Impact Factor:
1.743
Network Exploratory Analysis on Subway Transportation Systems against Complex Threats Including a Human Factors Perspective
Nistor, M. S., Dehmer, M., Pickl, S.
Procedia Manufacturing, Vol. 3, 2015, 6593-6598
68
Numerical Evaluation and Comparison of Kalantari's Zero Bounds for Complex Polynomials
Dehmer M., Tsoy Y. R.
PLoS ONE, Vol. 9 (10), 2014, e110540
69 Link
Netmes: Assessing gene network inference algorithms by ensemble network-based measures
Altay G., Kurt Z., Dehmer M., Emmert-Streib F.
Evolutionary Bioinformatics, Vol. 10, 2014, 1-9
70 Link
Extremality of Degree-Based Graph Entropies
Cao S., Dehmer M., Shi Y.
Information Sciences, Vol. 278, 2014, 22-33
71 Link
Impact Factor:
3.291
Entropy Bounds for Dendrimers
Chen Z., Dehmer M., Emmert-Streib F., Shi Y.
Applied Mathematics and Computation, Vol. 242, 2014, 462-472
72 Link
Impact Factor:
1.6
Structural Differentiation of Graphs using Hosoya-based Indices
Dehmer M., Mowshowitz A., Shi Y.
PLoS ONE, 2014, Vol. 9 (7), e102459
73 Link
Impact Factor:
4.351
A Computational Approach to Construct a Multivariate Complete Graph Invariant
Dehmer M., Emmert-Streib M., Grabner M.
Information Sciences, Vol. 260 (1), 2014, 200-208
74 Link
Impact Factor:
3.291
The Uniqueness of DMAX-Matrix Graph Invariants
Dehmer M., Shi Y.
PLoS ONE, Vol. 9 (1), 2014, e83868
75 Link
Impact Factor:
4.351
A Case Study of Cracks in the Scientific Enterprise: Reinvention of Information-Theoretic Measures for Graphs
Dehmer M., Mowshowitz A.
Complexity, 2014, doi: 10.1002/cplx.21540
76 Link
Connections Between Generalized Graph Entropies and Graph Energy
Dehmer M., Li X., Shi Y.
Complexity, 2014, doi: 10.1002/cplx.21539
77 Link
Interrelations of Graph Distance Measure Based on Topological Indices
Dehmer M., Emmert-Streib M., Shi Y.
PLoS ONE, Vol. 9 (4), 2014, e94985
78 Link
Impact Factor:
4.351
Gene regulatory networks and their applications: Understanding biological and medical problems in terms of networks
Emmert-Streib M., Dehmer M., Haibe-Kains B.
Frontiers in Cell and Developmental Biology, 2014, Vol. 2, Article 38, doi: 10.3389/fcell.2014.00038
79 Link
Untangling statistical and biological models to understand network inference: The need for a genomics network ontology
Emmert-Streib M., Dehmer M., Haibe-Kains B.
Frontiers in Genetics, 2014, Vol. 5, Article 299, doi: 10.3389/fgene.2014.00299
80 Link
The gene regulatory network for breast cancer: Integrated regulatory landscape of cancer hallmarks
Emmert-Streib M., de Matos Simoes R., Mullan P., Haibe-Kains B., Dehmer M.
Frontiers in Genetics, Vol. 15 (5), 2014
81 Link
Functional and genetic analysis of the colon cancer network
Emmert-Streib F., de Matos Simoes R., Glazko G., McDade S., Haibe-Kains B., Holzinger A., Dehmer M., Campbell F.
BMC Bioinformatics, Vol. 15 (Suppl 6):S6, 2014
82 Link
Impact Factor:
2.67
Knowledge Discovery and Interactive Data Mining in Bioinformatics - State-of-the-Art, Future challenges and Research Directions
Holzinger A., Dehmer M., Jurisica I.
BMC Bioinformatics, Vol. 15 (6):I1, 2014
83 Link
Impact Factor:
2.67
Probabilistic Inequalities for Evaluating Structural Network Measures
Kraus V., Dehmer M., Emmert-Sreib F.
Information Sciences, Vol. 288, 2014, 220–245
84 Link
Impact Factor:
3.291
Large-Scale Analysis of Structural Branching Measures
Schutte M., Dehmer M.
Journal of Mathematical Chemistry, 2014, Vol. 52 ( 3), pp 805-819
85 Link
Impact Factor:
1.27
NetBioV: An R package for visualizing large network data in biology and medicine
Tripathi S., Dehmer M., Emmert-Streib F.
Bioinformatics, 2014
86 Link
Impact Factor:
4.621
A Large-Scale Database of Molecular Descriptors using compounds from Pub- Chem
Dander A., Müller L., Gallasch R., Pabinger S., Emmert-Streib F., Graber A., Dehmer M.
Source Code for Biology and Medicine, Vol. 8 (22), 2013
87 Link
Large-Scale Evaluation of Molecular Descriptors by Means of Clustering
Dehmer M., Emmert-Streib F., Tripathi S.
PLoS ONE, Vol. 8 (12), 2013, e83956
88 Link
Impact Factor:
4.351
Quantitative Network Measures as Biomarkers for Classifying Prostate Cancer Disease States: A Systems Approach to Diagnostic Biomarkers
Dehmer M., Müller L., Emmert-Streib F.
PLoS ONE, Vol. 8 (11), 2013, e77602
89 Link
Impact Factor:
4.351
The Discrimination Power of Structural SuperIndices
Dehmer M., Mowshowitz A.
PLoS ONE, Vol. 8 (7), 2013, e70551
90 Link
Impact Factor:
4.351
An Efficient Heuristic Approach to Detecting Graph Isomorphism Based on Combinations of Highly Discriminating Invariants
Dehmer M., Grabner M., Mowshowitz A., Emmert-Streib F.
Advances in Computational Mathematics, Vol. 39 (2), 2013, 311-325
91 Link
Impact Factor:
1.562
Network Nursing: Connections between Nursing and Complex Network Science
Dehmer M., Hackl W. O., Emmert-Streib F., Schulc E., Them C.
International Journal of Nursing Knowledge, Vol. 24 (3), 2013, 150-156
92 Link
Impact Factor:
0.361
The Discrimination Power of Molecular Identification Numbers Revisited
Dehmer M., Grabner M.
MATCH Commun. Math. Comput. Chem., Vol. 69 (3), 2013, 785-794
93 Link
Impact Factor:
3.217
B-cell lymphoma gene regulatory networks: Biological consistency among inference methods
de Matos Simoes, Dehmer M., Emmert-Streib F.
Frontiers in Genetics, Vol. 4, Article 281, 2013
94 Link
Interfacing cellular networks of S. cerevisiae and E. coli: Connecting dynamic and genetic information
de Matos Simoes, Dehmer M., Emmert-Streib F.
BMC Genomics, Vol. 14 (324), 2013
95 Link
Impact Factor:
4.4
Enhancing systems medicine beyond genotype data by dynamic patient signatures: Having information and using it too
Emmert-Streib F., Dehmer M.:
Frontiers in Bioinformatics and Computational Biology, Vol. 4, Article 241, 2013
96 Link
Learning Systems Biology: Conceptual Considerations Toward a Web-based Learning Platform
Emmert-Streib F., Dehmer M., Lyardet F.
Education Sciences, Vol. 3 (2) 2013, 158-171
97 Link
The human disease network. Opportunities for classification, diagnosis and prediction of disorders and disease genes
Emmert-Streib F., Tripathi S., de Matos Simoes R., Hawwa A. F., Dehmer M.
Systems Biomedicine, Vol. 1 (1), 2013, 1-8
98 Link
On Structure-Sensitivity of Degree-Based Topological Indices
Furtula B., Gutman I., Dehmer M.
Applied Mathematics and Computation, Vol. 219, 2013, 8973–8978
99 Link
Impact Factor:
1.6
On Sphere-Regular Graphs and the Extremality of Information-Theoretic Network Measures
Kraus V., Dehmer M., Schutte M.
MATCH Commun. Math. Comput. Chem., Vol. 70 (3), 2013, 885-900
100 Link
Impact Factor:
3.217
Multivariate linear QSPR/QSAR models: Rigorous evaluation of variable selection for PLS
Varmuza K., Filzmoser P., Dehmer M.
Computational and Structural Biotechnology Journal, Vol. 5 (6), e201302007, 2013, 1-10
101 Link
On Extremal Properties of Graph Entropies
Dehmer M., Kraus V.
MATCH Commun. Math. Comput. Chem., Vol. 68 (3), 2012, 889-912
102 Link
Impact Factor:
3.217
The Quality of Zero Bounds for Complex Polynomials
Dehmer M., Tsoy Y. R.
PLoS ONE, Vol. 7 (7), 2012, e39537
103 Link
Impact Factor:
4.351
Uniquely Discriminating Molecular Structures Using Novel Eigenvalue-Based Descriptors
Dehmer M., Sivakumar L., Varmuza K.
MATCH Commun. Math. Comput. Chem., Vol. 67 (1), 2012, 147-172
104 Link
Impact Factor:
3.217
Structural Discrimination of Networks by Using Distance, Degree and Eigenvalue-Based Measures
Dehmer M., Grabner M., Furtula B.
PLoS ONE, Vol. 7 (7), 2012, e38564
105 Link
Impact Factor:
4.351
Information Indices with High Discriminative Power for Graphs
Dehmer M., Grabner M., Varmuza K.
PLoS ONE 7 (2), 2012, e31214
106 Link
Impact Factor:
4.351
Location of Zeros of Wiener and Distance Polynomials
Dehmer M., Ilić A.
PLoS ONE 7 (3), 2012, e28328
107 Link
Impact Factor:
4.351
Recent Developments in Quantitative Graph Theory: Information Inequalities for Networks
Dehmer M., Sivakumar L.
PLoS ONE, Vol. 7 (2), 2012, e31395
108 Link
Impact Factor:
4.351
A Bayesian analysis of the chromosome architecture of human disorders by integrating reductionist data
Emmert-Streib F., De Matos Simoes R., Tripathi S., Glazko G. V., Dehmer M.
Scientific Reports (Nature Publishing), Vol. 2, 2012
109 Link
Exploring statistical and population aspects of network complexity
Emmert-Streib F., Dehmer M.
PLoS ONE, Vol. 7 (5), 2012, e34523
110 Link
Impact Factor:
4.351
RMol: A Toolset for Transforming SD/Molfile structure information into R Objects
Grabner M., Dehmer M., Varmuza K.
Source Code for Biology and Medicine, Vol. 7 (12), 2012
111 Link
Effects of pooling samples on the performance of classification algorithms: A comparative study
Kusonmano K., Kugler K., Graber A., Emmert-Streib F., Dehmer M.
The Scientific World Journal, Vol. 12, 2012
112 Link
Impact Factor:
1.524
Entropy and the Complexity of Graphs Revisited
Mowshowitz A., Dehmer M.
Entropy, Vol. 14 (3), 2012, 559-570
113 Link
Impact Factor:
1.109
A Network-Based Feature Selection Approach to Identify Metabolic Signatures in Disease
Netzer M., Kugler K., Müller M., Weinberger K., Graber A., Baumgartner C., Dehmer M.
Journal of Theoretical Biology, Vol. 310, 2012, 216-222
114 Link
Impact Factor:
2.371
Towards Information Inequalities for Generalized Graph Entropies
Sivakumar L., Dehmer M.
PLoS ONE, Vol. 7 (6), 2012, e38159
115 Link
Impact Factor:
4.351
Redundancy analysis for characterizing the correlation between groups of variables - Applied to molecular descriptors
Varmuza K., Filzmoser P., Liebmann B., Dehmer M.
Chemometrics and Intelligent Laboratory Systems, Vol. 117, 31-41, 2012
116 Link
Impact Factor:
2.111
Information Theory of Networks
Dehmer M.
Symmetry, Vol. 3 (4), 2011, 767-779
117 Link
Inclusion Radii for the Zeros of Special Polynomials
Dehmer M.
Buletinul Academiei de Stiinte a Republicii Moldova. Matematica, Vol. 3 (67), 2011, 84-90
118 Link
Impact Factor:
0.111
Bounds on the Moduli of Polynomial Zeros
Dehmer M., Mowshowitz A.
Applied Mathematics and Computation, Vol. 218 (8), 2011, 4128-4137
119 Link
Impact Factor:
1.6
Graph Prototyping for Co-Expression Cancer Networks
Kugler K., Müller L., Graber A., Dehmer M.
PLoS ONE, Vol. 6 (7), 2011, e22843
120 Link
Impact Factor:
4.351
A Network-Based Approach to Classify the Three Domains of Life
Müller L., Kugler K., Graber A., Dehmer M.
Biology Direct, 2011, Vol. 6 (53)
121 Link
Impact Factor:
3.74
Structural Measures for Network Biology Using QuACN
Müller L., Kugler K., Graber A., Emmert-Streib F., Dehmer M.
BMC Bioinformatics, 2011, Vol. 12 (492)
122 Link
Impact Factor:
2.67
Classification of AMES mutagenicity from molecular descriptors - Applying D-PLS regression and repeated double cross validation
Varmuza K., Dehmer M.
Asian Chemistry Letters, 2011, accepted
123 Link
Generalized Graph Entropies
Dehmer M., Mowshowitz A.
Complexity, Vol. 17 (2), 2011, 45-50
124 Link
Impact Factor:
0.948
A History of Graph Entropy Measures
Dehmer M., Mowshowitz A.
Information Sciences, Vol. 1 (1), 2011, 57-78
125 Link
Bib
Impact Factor:
3.291
Connections between Classical and Parametric Network Entropies
Dehmer M., Mowshowitz A., Emmert-Streib F.
PLoS ONE, Vol. 6 (1), 2011, e15733
126 Bib
Impact Factor:
4.351
Networks for Systems Biology: Conceptual Connection of Data and Function
Emmert-Streib F., Dehmer M.
IET Systems Biology, Vol. 5 (3), 2011, 185-207
127 Bib
Impact Factor:
2.384
The Impact of Storage Effects in Biobanks on Biomarker Discovery in Systems Biology Studies
Balasubramanian R., Müller L., Kugler K., Hackl W., Pleyer L., Dehmer M., Graber A.
Biomarkers, Vol. 15, No. 8 , 2010, 677-683
128 Link
Bib
Impact Factor:
1.608
Network Analysis Using a Novel Highly Discriminating Topological Index
Diudea M. V., Ilić A., Varmuza K., Dehmer M.
Complexity, Vol. 16 (6), 2010, 32-39
129 Link
Bib
Impact Factor:
0.948
Novel Topological Descriptors for Analyzing Biological Networks
Dehmer M., Barbarini N., Varmuza K., Graber A.
BMC Structural Biology, Vol. 10 (18), 2010
130 Link
Bib
Impact Factor:
2.79
New Polynomial-based Molecular Descriptors With Low Degeneracy
Dehmer M., Müller L., Graber A.
PLoS ONE, Vol. 5 (7), 2010, e11393
131 Link
Bib
Impact Factor:
4.351
Novel Information Measure for the Analysis of Chemical Graphs (in Russian)
Dehmer M., Emmert-Streib F., Tsoy Y. R., Varmuza K.
Bulletin of the Tomsk Polytechnic University, Vol. 316 (5), 2010, 5-11
132 Bib
Impact Factor:
0.12
Towards Structural Network Analysis
Dehmer M., Popovscaia M.
Buletinul Academiei de Stiinte a Republicii Moldova. Matematica, Vol. 1, 2010, 3-22
133 Link
Bib
Impact Factor:
0.111
Inequalities for Entropy-Based Measures of Network Information Content
Dehmer M., Mowshowitz A.
Applied Mathematics and Computation, Vol. 215 (12), 2010, 4263-4271
134 Link
Bib
Impact Factor:
1.6
Influence of the Time Scale on the Construction of Financial Networks
Emmert-Streib F., Dehmer M.
PLoS ONE, Vol. 5 (9), 2010, e12884
135 Link
Bib
Impact Factor:
4.351
Identifying Critical Financial Networks of the DJIA: Toward(s) a Network based Index
Emmert-Streib F., Dehmer M.
Complexity, Vol. 16, Issue 1, 2010, 24-33
136 Link
Bib
Impact Factor:
0.948
A Symmetry Index for Graphs
Mowshowitz A., Dehmer M.
Symmetry: Culture and Science, Vol. 21 (4), 2010
137 Link
Bib
Systems Biology: Opening new avenues in clinical research
Molina F., Dehmer M., Perco P., Graber A., Girolami M., Spasovski G., Schanstra J. P., Vlahou A.
Nephrology Dialysis Transplantation, Vol. 25 (4), 1015-1018, 2010
138 Link
Bib
Impact Factor:
3.306
QuACN – An R Package for Analyzing Complex Biological Networks Quantitatively
Müller L., Kugler K., Dander A., Graber A., Dehmer M.
Bioinformatics, Vol.27 ( 1), 2010, 140-141
139 Link
Bib
Impact Factor:
4.621
On Quantitative Network Complexity Measures for Business Process Models
Borgert S., Dehmer M., Aitenbichler E
Acta Universitatis Apulensis, 2009, accepted
140 Bib
Information Measures to Characterize Weighted Chemical Structures
Dehmer M., Borgert S.
Acta Universitatis Apulensis, 2009, accepted
141 Link
Bib
A Large Scale Analysis of Information-Theoretic Network Complexity Measures Using Chemical Structures
DehmerM., Barbarini N., Varmuza K., Graber A.
PLoS ONE, Vol. 4 (12), 2009, e8057
142 Link
Bib
Impact Factor:
4.351
On Entropy-based Molecular Descriptors: Statistical Analysis of Real and Synthetic Chemical Structures
Dehmer M., Varmuza K., Borgert S., Emmert-Streib F.
Journal of Chemical Information and Modelling, Vol. 49, 2009, 1655-1663
143 Link
Bib
Impact Factor:
3.882
Characterizing Classes of Structured Objects by Means of Information Inequalities
Dehmer M., Borgert S.
Cybernetics and Systems, Vol. 40 (3), 2009, 249-258
144 Link
Bib
Impact Factor:
0.78
Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae
Emmert-Streib F., Dehmer M.
BMC Systems Biology, 2009, Vol. 3 (76)
145 Link
Bib
Impact Factor:
4.06
Predicting cell cycle regulated genes by causal interactions
Emmert-Streib F., Dehmer M.
PLoS ONE, Vol. 4 (8), 2009, e6633
146 Link
Bib
Impact Factor:
4.351
Information Processing in the Transcriptional Regulatory Network of Yeast: Functional Robustness
Emmert-Streib F., Dehmer M.
BMC Systems Biology, 2009, Vol. 3 (35)
147 Link
Bib
Impact Factor:
4.06
Fault Tolerance of Information Processing in Gene Networks
Emmert-Streib F., Dehmer M.
Physica A: Statistical Mechanics and its Applications, Vol. 338 (4), 2009, 541-548
148 Link
Bib
Impact Factor:
1.562
Information Inequalities for Graphs
Dehmer M., Borgert S., Bonchev D.
Symmetry: Culture and Science, 19(4), 2008, p. 269-284
149 Link
Bib
Structural Information Content of Networks: Graph Entropy based on Local Vertex Functionals
Dehmer M., Emmert-Streib F.
Computational Biology and Chemistry, Vol. 32 (2), 2008, 131-138
150 Link
Bib
Impact Factor:
1.37
The Structural Information Content of Chemical Networks
Dehmer M., Emmert-Streib F.
Zeitschrift für Naturforschung A, Vol. 63(3-4), 2008, 155-158
151 Link
Bib
Impact Factor:
0.63
Entropy Bounds for Hierarchical Molecular Networks
Dehmer M., Borgert S., Emmert-Streib F.
PLoS ONE, Vol. 3 (8), 2008, e3079
152 Link
Bib
Impact Factor:
4.351
Information-theoretic Concepts for the Analysis of Complex Networks
Dehmer M.
Applied Artificial Intelligence, Vol. 22, 2008, 684-706
153 Link
Bib
Impact Factor:
0.58
Information Processing in Complex Networks: Graph Entropy and Information Functionals
Dehmer M.
Applied Mathematics and Computation, Vol. 201 (1-2), 2008, 82-94
154 Link
Bib
Impact Factor:
1.6
A Novel Method for Measuring the Structural Information Content of Networks
Dehmer M.
Cybernetics and Systems, Vol. 39 (8), 2008, 825-842
155 Link
Bib
Impact Factor:
0.78
A Comparative Analysis of Multidimensional Features of Objects Resembling Sets of Graphs
Dehmer M., Emmert-Streib F., Gesell T.
Applied Mathematics and Computation, Vol. 196 (1), 2008, 221-235
156 Link
Bib
Impact Factor:
1.6
Robustness in Scale-free Networks: Comparing Directed and Undirected Networks
Emmert-Streib F., Dehmer M.
International Journal of Modern Physics C, Vol. 19 (5), 2008, 717-726
157 Link
Bib
Impact Factor:
1.022
On Bounds for the Zeros of Univariate Polynomials
Dehmer M., Kilian J.
International Journal of Applied Mathematics and Computer Science, Vol. 4 (2), 2007, 118-123
158 Link
Bib
Impact Factor:
0.684
Structural Similarity of Directed Universal Hierarchical Graphs: A low Computational Complexity Approach
Dehmer M., Emmert-Streib F.
Applied Mathematics and Computation, Vol. 194 (1), 2007, 7-20
159 Link
Bib
Impact Factor:
1.6
A new Method of Measuring Similarity for a Special Class of Directed Graphs
Dehmer M., Mehler A.
Tatra Mountains Mathematical Publications, 2007, Vol. 36, 39-59
160 Bib
Comparing Large Graphs Efficiently by Margins of Feature Vectors
Dehmer M., Emmert-Streib F.
Applied Mathematics and Computation, Vol. 188 (2), 2007, 1699-1710
161 Link
Bib
Impact Factor:
1.6
Nonlinear Time Series Prediction based on a Power-Law Noise Model
Emmert-Streib F., Dehmer M.
International Journal of Modern Physics C, Vol. 18 (12), 1839-1852, 2007
162 Link
Bib
Impact Factor:
1.022
Information Theoretic Measures of UHG Graphs with Low Computational Complexity
Emmert-Streib F., Dehmer M.
Applied Mathematics and Computation, Vol. 190 (2), 2007, 1783-1794
163 Link
Bib
Impact Factor:
1.6
Topological Mappings between Graphs, Trees and Generalized Trees
Emmert-Streib F., Dehmer M.
Applied Mathematics and Computation, Vol. 186 (2), 2007, 1326-1333
164 Link
Bib
Impact Factor:
1.124
A Similarity Measure for Graphs with low Computational Complexity
Dehmer M., Emmert-Streib F., Kilian J.
Applied Mathematics and Computation, Vol. 182 (1), 2006, 447-459
165 Link
Bib
Impact Factor:
1.124
Perspectives of Graph Mining Techniques
Dehmer M., Emmert-Streib F. Wolkenhauer O.
Rostocker Informatik Berichte, Vol. 30 (2), 2006, 47-57
166 Link
On the Location of Zeros for complex Polynomials
Dehmer M.
Journal of Inequalities in Pure and Applied Mathematics, Vol. 7 (1), 2006
167 Link
Bib
Measuring the Structural Similarity of Web-based Documents: A novel Approach
Dehmer M., Emmert-Streib F., Mehler A., Kilian J.
International Journal of Computational Intelligence, Vol. 3 (1), 2006, 1-7
168 Link
Bib
Data Mining-Konzepte und graphentheoretische Methoden zur Analyse web-basierter Daten
Dehmer M.
Journal of Computational Linguistics and Language Technology, 2005, 113-143
169 Link
Bib
Ranking Genes from DNA Microarray Data of Cervical Cancer by a local Tree Comparison
Emmert-Streib F., Dehmer M., Liu J., Mühlhäuser M.
International Journal of Biomedical Science, Vol. 1 (1), 2005, 17-22
170 Link
Bib

Peer-Reviewed Conference Publications

Aspects of Quantitative Analysis of Transportation Networks, In: Proceedings of Future Security, Berlin, Germany
Dehmer M., Nistor M. S., Schmitz W., Neubecker K. A
2015
171
Exploring Data Analysis Techniques for Threat Estimation, In: Proceedings of Future Security, Berlin, Germany
Dehmer M., Lechleuthner A., Mudimu O. A., Pickl S.
2015
172
A Survey on Statistical Network Analysis, In: Proceedings of the 2015 Conference on Foundations in Computer Science, Las Vegas, USA
Dehmer M., Pickl S., Wang Z.
Vol. 2, 2015
173
Personalized Medicine by Means of Complex Networks - A Big Data Challenge, In: Proceedings of the Workshop Big Data, Big Data und Datenschutz – Gegenseitige Herausforderungen, Editors: Weber R. H., Thouvenin F.
Dehmer M., Holzinger A., Emmert-Streib F.
Zürich 2014, Switzerland
174 Link
Structural Analysis of Molecular Networks: AMES Mutagenicity, In: Proceedings of the 2011 Conference on Bioinformatics & Computational Biology (BIOCOMP’11)
Müller L. A. J., Kugler K. G., Dehmer M.
Las Vegas, USA, Vol. 1, 2011, 196-201
175
Analysis of Metabolic Networks: On the Similarity of the Three Domains of Life, In: Proceedings of the 2011 Conference on Bioinformatics & Computational Biology (BIOCOMP’11)
Kugler K. G., Müller L. A. J., Dehmer M.
Las Vegas, USA, Vol. 2, 2011, 361-366
176
A Novel Majority Vote Count Algorithm for Integrative Analysis of Association Networks, In: Proceedings of the 2010 Conference on Bioinformatics & Computational Biology (BIOCOMP’10)
Kugler K. G., Müller L. A. J., Gallasch R. K., Graber A., Dehmer M.
Las Vegas, USA, 2010, 62-67
177 Bib
A Network-based Approach to Classify Disease Stages of Prostate Cancer Using Quantitative Network Measures, In: Proceedings of the 2010 Conference on Bioinformatics & Computational Biology (BIOCOMP’10)
Müller L. A. J., Kugler K. G., Dander A., Graber A., Dehmer M.
Las Vegas, USA, 2010, 55-61
178 Bib
A Comparative Study of Complexity Measure to Analyze Business Process Models, In: Proceedings of UICS’2009
Borgert S., Dehmer M., Aitenbichler E.
International Symposium on Understanding Intelligent and Complex Systems, 2009
179 Bib
On the Information Content of Weighted Chemical Structures, In: Proceedings of UICS’2009
Dehmer M., Borgert S.
International Symposium on Understanding Intelligent and Complex Systems, 2009
180 Bib
Towards Network Complexity. In: Proceedings of COMPLEX’2009 - The First International Conference on Complex Sciences: Theory and Applications, Springer
Dehmer M., Emmert-Streib F.
Lecture Notes, Vol. 4, 2009, 707-714
181 Bib
Towards a Partitioning of the Input Space of Boolean Networks: Variable Selection using Bagging. In: Proceedings of COMPLEX’2009 - The First International Conference on Complex Sciences: Theory and Applications
Emmert-Streib F., Dehmer M.
Springer, Lecture Notes, Vol. 4, 2009, 715-723
182 Bib
Organizational Structure of the Transcriptional Regulatory Network of Yeast: Periodic Genes. In: Proceedings of COMPLEX’2009 - The First International Conference on Complex Sciences: Theory and Applications
Emmert-Streib F., Dehmer M.
Springer, Lecture Notes, Vol. 4 2009, 140-148
183 Bib
Network Classes and Graph Complexity Measures. In: First International Conference on Complexity and Intelligence of the Artificial and Natural Complex Systems, Medical Applications of the Complex Systems, Biomedical Computing (CANS'08)
Dehmer M., Borgert S., Emmert-Streib F.
Petru Maior University Press, Targu Mures, Romania, 2008, p. 77-84
184 Bib
Investigating Network Classes by Measuring Their Complexity. In: Complexity in artificial and natural systems
Dehmer M., Borgert S., Emmert-Streib F.
Petru Maior University Press, Targu Mures, Romania, 2008, p. 100-107
185 Bib
Relations Between the Topological Complexities of Complex Networks, In: Proceedings of the 2008 International Conference on Machine Learning: Models, Technologies & Applications (MLMTA’08)
Dehmer M.
Las Vegas, USA, 2008
186 Bib
Towards a channel capacity of communication networks. In: First International Conference on Complexity and Intelligence of the Artificial and Natural Complex Systems, Medical Applications of the Complex Systems, Biomedical Computing (CANS'08)
Emmert-Streib F., Dehmer M.
Petru Maior University Press, Targu Mures, Romania, 2008, p. 94-99
187 Bib
Quantifying Communication Capabilities of Networks. In: Complexity in artificial and natural systems
Emmert-Streib F., Dehmer M.
Petru Maior University Press, Romania, 2008, p. 115-119
188 Bib
Graph-theoretical Characterizations of Generalized Trees, Proceedings of the 2007 International Conference onMachine Learning: Models, Technologies & Applications (MLMTA’07)
Dehmer M., Mehler A., Emmert-Streib F.
Las Vegas, USA, 2007
189 Bib
A Graph Mining Technique for Automatic Classification of Web Genre Data, In: Proceedings of the 2007 International Conference on Machine Learning: Models, Technologies & Applications (MLMTA’07)
Dehmer M., Emmert-Streib F., Zulauf A.
Las Vegas, USA, 2007
190 Bib
Global information processing in gene networks: Fault Tolerance, In: Proceedings of the bio-inspired models of network, information, and computing systems
Emmert-Streib F., Dehmer M.
Bionetics 2007, 326-329
191 Bib
Optimization Procedure for Predicting Nonlinear Time Series based on a non-Gaussian Noise Model, MICAI 2007: Advances in Artificial Intelligence, Lecture Notes in Computes Science (LNCS)
Emmert-Streib F., Dehmer M.
Lecture Notes in Artificial Intelligence, Vol. 4827, 2007, 540-549
192 Bib
Aisles through the Category Forest - Utilising the Wikipedia Category System for Corpus Building in Machine Learning
Gleim R., Mehler A., Dehmer M., Pustylnikov O.
Proceedings of the 3rd International Conference on Web Information Systems and Technologies (WEBIST ’07), 2007, 142-149
193 Bib
Theoretical Bounds for the Number of inferable Edges in sparse Random Networks, Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, Gene Networks: Theory and Application
Emmert-Streib F., Dehmer M.
Workshop at BIOCOMP’06, Las Vegas, USA, 2006, 472-476
194 Bib
Influence of Prior Information on the Reconstruction of the Yeast Cell Cycle from Microarray Data, Proceedings of the 2006 International Conference on Bioinformatics & Computational Biology, Gene Networks: Theory and Application
Emmert-Streib F., Dehmer M., Seidel C.
Workshop at BIOCOMP’06, Las Vegas, USA, 2006, 477-482
195 Bib
Web Corpus Mining by Instance of Wikipedia, Proceedings of the EACL 2006 Workshop on Web as Corpus
Gleim R., Mehler A., Dehmer M.
Trento, Italy, 2006, 67-74
196 Bib
Towards Clustering of web-based Document Structures
Dehmer M., Emmert-Streib F., Kilian J., Zulauf A.
VIII. International Conference on Enformatika, Systems Sciences and Engineering, Krakow, Poland, Enformatika 10, 2005, 304-310
197 Bib
Application of a Similarity Measure for Graphs to web-based Documents, VI. International Conference on Enformatika, Systems Sciences and Engineering
Dehmer M., Emmert-Streib F., Mehler A., Kilian J., Mühlhäuser M.
Budapest, Hungary, Enformatika 8, 2005, 77-81
198 Bib
First Studies of the Influence of Single Gene Perturbations on the Inference of Genetic Networks
Emmert-Streib F., Dehmer M.
VIII. International Conference on Enformatika, Systems Sciences and Engineering, Krakow, Poland, Enformatika 10, 2005, 65-69
199 Bib
Influence of Noise on the Inference of Dynamic Bayesian Networks from Short Time Series
Emmert-Streib F., Dehmer M., Bakir H.G., Mühlhäuser M.
VIII. International Conference on Enformatika, Systems Sciences and Engineering, Krakow, Poland, Enformatika 10, 2005, 70-74
200 Bib
A Systems Approach to Gene Ranking for DNA Microarray Data for Cervical Cancer
Emmert-Streib F., Dehmer M., Liu J., Mühlhäuser M.
VI. International Conference on Enformatika, Sciences and Engineering, Budapest, Hungary, Enformatika 8, 2005, 82-87
201 Bib
A Systems Biology approach for the classification of DNA Microarray Data, Applications of Statistical and Machine Learning. Methods in Bioinformatics
Emmert-Streib F., Dehmer M.
Proceedings of BIT 2005 - Bioinformatics Workshop,Torun, Poland, September 15-16, 2005
202 Bib
Classification of large Graphs by a local Graph Decomposition, Proceedings of the 2005 International Conference on Data Mining (DMIN’05)
Emmert-Streib F., Dehmer M., Kilian J.
Las Vegas, USA, Editors: Arabnia H. R., Scime A., 2005, 200-207
203 Bib
Towards Structure-Sensitive Hypertext Categorization. In: Spiliopoulou M., Kruse R., Borgelt C., Nürnberger A., Gaul W. (Editors)
Mehler A., Gleim R., Dehmer M.
Proceedings of the 29th Annual Conference of the German Classification Society, Universität Magdeburg, 2005, Berlin, New York: Springer, 406-413
204 Bib
Zur automatischen Klassifikation von Webgenres, In: Fisseni B., Schmitz H. C., Schröder B., Wagner P. (Editors): Sprachtechnologie, mobile Kommunikation und linguistische Ressourcen
Mehler A., Dehmer M., Gleim R.
Beiträge zur GLDV-Tagung 2005, Universität Bonn, Peter Lang Publishing, 158-174
205 Bib
Towards logical Hypertext Structure - A graph-theoretic Perspective
Mehler A., Dehmer M., Gleim R.
Proceedings of I2CS’04, Lecture Notes, Berlin, New York: Springer, 2005, 136-150
206 Bib
Aspekte der Kategorisierung von Webseiten
Dehmer M., Mehler A., Gleim R.
Lecture Notes in Informatics, Springer, Jahrestagung der Gesellschaft für Informatik, Berlin, Germany, 2004, 39-43
207 Bib

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