Research

Network Analysis

Some Collaborators

Prof. Dr. Danail Bonchev
Virginia Commonwealth University, Center for the Study of Biological Complexity, USA
http://www.vcu.edu/csbc/over_news.html

Dr. Frank Emmert-Streib
Queens University Belfast, Head of the Computational Biology and Machine Learning Lab, UK
http://www.bio-complexity.com

Prof. Dr. Armin Graber
UMIT, Institute of Bioinformatics and Translational Research, Austria; Novartis, Translational Medicine, USA
http://www.umit.at/page.cfm?vpath=departments/technik/bioinf/team

Dr. Armindo Salvador
University of Coimbra, Head of the Molecular Systems Biology Group, Portugal
http://cnc.cj.uc.pt/~salvador/



Recent Publications

Books (Edited and Co-edited)

Statistical Modelling of Molecular Descriptors in QSAR/QSPR
Dehmer M., Varmuza K., Bonchev D.
Wiley-VCH, 2012
13 Link
Bib
Applied Statistics for Network Biology: Methods in Systems Biology
Dehmer M., Emmert-Streib F., Graber A., Salvador A.
Wiley-VCH, 2011
15 Link
Bib
Medical Biostatistics for Complex Diseases
Emmert-Streib F., Dehmer M.
Wiley-VCH Publishing, 2010
17 Link
Bib
Analysis of Microarray Data: A Network-based Approach
Emmert-Streib F., Dehmer M.
Wiley-VCH Publishing, 2008
19 Link
Bib

Book Chapter

On Measuring the Complexity of Sets of Graphs Using Graph Entropy. In: Enachescu F., Filip F. G., Iantovics B. (Editors): Advanced Computational Technologies
Dehmer M., Mowshowitz A.
Romanian Academy Press, 2012, 176-184
37 Bib

Journal Publications

Networks for Systems Biology: Conceptual Connection of Data and Function
Emmert-Streib F., Dehmer M.
IET Systems Biology, Vol. 5 (3), 2011, 185-207
127 Bib
Impact Factor:
2.384
The Impact of Storage Effects in Biobanks on Biomarker Discovery in Systems Biology Studies
Balasubramanian R., Müller L., Kugler K., Hackl W., Pleyer L., Dehmer M., Graber A.
Biomarkers, Vol. 15, No. 8 , 2010, 677-683
128 Link
Bib
Impact Factor:
1.608
Network Analysis Using a Novel Highly Discriminating Topological Index
Diudea M. V., Ilić A., Varmuza K., Dehmer M.
Complexity, Vol. 16 (6), 2010, 32-39
129 Link
Bib
Impact Factor:
0.948
Novel Topological Descriptors for Analyzing Biological Networks
Dehmer M., Barbarini N., Varmuza K., Graber A.
BMC Structural Biology, Vol. 10 (18), 2010
130 Link
Bib
Impact Factor:
2.79
New Polynomial-based Molecular Descriptors With Low Degeneracy
Dehmer M., Müller L., Graber A.
PLoS ONE, Vol. 5 (7), 2010, e11393
131 Link
Bib
Impact Factor:
4.351
Systems Biology: Opening new avenues in clinical research
Molina F., Dehmer M., Perco P., Graber A., Girolami M., Spasovski G., Schanstra J. P., Vlahou A.
Nephrology Dialysis Transplantation, Vol. 25 (4), 1015-1018, 2010
138 Link
Bib
Impact Factor:
3.306
QuACN – An R Package for Analyzing Complex Biological Networks Quantitatively
Müller L., Kugler K., Dander A., Graber A., Dehmer M.
Bioinformatics, Vol.27 ( 1), 2010, 140-141
139 Link
Bib
Impact Factor:
4.621
On Entropy-based Molecular Descriptors: Statistical Analysis of Real and Synthetic Chemical Structures
Dehmer M., Varmuza K., Borgert S., Emmert-Streib F.
Journal of Chemical Information and Modelling, Vol. 49, 2009, 1655-1663
143 Link
Bib
Impact Factor:
3.882
Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae
Emmert-Streib F., Dehmer M.
BMC Systems Biology, 2009, Vol. 3 (76)
145 Link
Bib
Impact Factor:
4.06
Predicting cell cycle regulated genes by causal interactions
Emmert-Streib F., Dehmer M.
PLoS ONE, Vol. 4 (8), 2009, e6633
146 Link
Bib
Impact Factor:
4.351
Information Processing in the Transcriptional Regulatory Network of Yeast: Functional Robustness
Emmert-Streib F., Dehmer M.
BMC Systems Biology, 2009, Vol. 3 (35)
147 Link
Bib
Impact Factor:
4.06
Fault Tolerance of Information Processing in Gene Networks
Emmert-Streib F., Dehmer M.
Physica A: Statistical Mechanics and its Applications, Vol. 338 (4), 2009, 541-548
148 Link
Bib
Impact Factor:
1.562

Data Science, Big Data and Cybersecurity

Some Collaborators

Dr. Frank Emmert-Streib
Queens University Belfast, Head of the Computational Biology and Machine Learning Lab, UK
http://www.bio-complexity.com

Prof. Dr. Abbe Mowshowitz
New York City College, Department of Computer Science, USA
http://www-cs.ccny.cuny.edu/~abbe/

Prof. Dr. Bo Hu
Universität der Bundeswehr München, Institute of Business Management
https://www.unibw.de/bw/institute-en/business/professors/hu-en?set_language=en



Recent Publications

Thesis

Strukturelle Analyse web-basierter Dokumente, PhD Thesis
Dehmer M.
TU-Darmstadt, 2005
1 Bib
Schrankensätze in der analytischen Theorie der Polynome, Diploma Thesis
Dehmer M.
UGH-Siegen, 1998
2 Bib

Books (Edited and Co-edited)

Structural Analysis of Complex Networks
Dehmer M.
Birkhäuser Publishing, 2010
16 Link
Bib
Analysis of Complex Networks: From Biology to Linguistics
Dehmer M., Emmert-Streib F.
Wiley-VCH Publishing, 2009
18 Link
Bib

Books (Associate Editor)

Proceedings of the 2007 International Conference on Scientific Computing (CSC’07)
Arabnia H. R. et al.; Dehmer M. (Associate Editor)
CSREA Press, 2007
23 Bib

Book Chapter

Mining Graph Patterns in Web-based Systems: A Conceptual View. In: Mehler A., Sharoff S., Rehm G., Santini M. (Editors): Genres on the Web: Computational Models and Empirical Studies
Dehmer M., Emmert-Streib F.
Springer, 2010, 237-253
43 Bib

Journal Publications

Towards Structural Network Analysis
Dehmer M., Popovscaia M.
Buletinul Academiei de Stiinte a Republicii Moldova. Matematica, Vol. 1, 2010, 3-22
133 Link
Bib
Impact Factor:
0.111
Influence of the Time Scale on the Construction of Financial Networks
Emmert-Streib F., Dehmer M.
PLoS ONE, Vol. 5 (9), 2010, e12884
135 Link
Bib
Impact Factor:
4.351
Identifying Critical Financial Networks of the DJIA: Toward(s) a Network based Index
Emmert-Streib F., Dehmer M.
Complexity, Vol. 16, Issue 1, 2010, 24-33
136 Link
Bib
Impact Factor:
0.948
A Comparative Analysis of Multidimensional Features of Objects Resembling Sets of Graphs
Dehmer M., Emmert-Streib F., Gesell T.
Applied Mathematics and Computation, Vol. 196 (1), 2008, 221-235
156 Link
Bib
Impact Factor:
1.6
Measuring the Structural Similarity of Web-based Documents: A novel Approach
Dehmer M., Emmert-Streib F., Mehler A., Kilian J.
International Journal of Computational Intelligence, Vol. 3 (1), 2006, 1-7
168 Link
Bib

Peer-Reviewed Conference Publications

Towards a Partitioning of the Input Space of Boolean Networks: Variable Selection using Bagging. In: Proceedings of COMPLEX’2009 - The First International Conference on Complex Sciences: Theory and Applications
Emmert-Streib F., Dehmer M.
Springer, Lecture Notes, Vol. 4, 2009, 715-723
182 Bib
Organizational Structure of the Transcriptional Regulatory Network of Yeast: Periodic Genes. In: Proceedings of COMPLEX’2009 - The First International Conference on Complex Sciences: Theory and Applications
Emmert-Streib F., Dehmer M.
Springer, Lecture Notes, Vol. 4 2009, 140-148
183 Bib

Statistical Data Analysis

Some Collaborators

Prof. Dr. Danail Bonchev
Virginia Commonwealth University, Center for the Study of Biological Complexity, USA
http://www.vcu.edu/csbc/over_news.html

Dr. Frank Emmert-Streib
Queens University Belfast, Head of the Computational Biology and Machine Learning Lab, UK
http://www.bio-complexity.com

Prof. Dr. Kurt Varmuza
Vienna University of Technology, Laboratory for Chemometrics, Institute of Chemical Engineering, Austria
http://www.lcm.tuwien.ac.at/vk/

Prof. Dr. Abbe Mowshowitz
New York City College, Department of Computer Science, USA
http://www-cs.ccny.cuny.edu/~abbe/



Recent Publications

Books (Edited and Co-edited)

Towards an Information Theory of Complex Networks: Statistical Methods and Applications
Dehmer M., Emmert-Streib F., Mehler A.
Birkhäuser Publishing, 2011
14 Link
Bib

Book Chapter

Recent Developments on Information-theoretic Descriptors to Analyze Networks. In: Gutman I., Furtula B. (Editors): Novel molecular Structure Descriptors - Theory and Applications I
Dehmer M., Graber A.
Mathematical Chemistry Monographs, Vol. 8, 2010, 21-38
42 Bib

Journal Publications

A History of Graph Entropy Measures
Dehmer M., Mowshowitz A.
Information Sciences, Vol. 1 (1), 2011, 57-78
125 Link
Bib
Impact Factor:
3.291
Connections between Classical and Parametric Network Entropies
Dehmer M., Mowshowitz A., Emmert-Streib F.
PLoS ONE, Vol. 6 (1), 2011, e15733
126 Bib
Impact Factor:
4.351
Inequalities for Entropy-Based Measures of Network Information Content
Dehmer M., Mowshowitz A.
Applied Mathematics and Computation, Vol. 215 (12), 2010, 4263-4271
134 Link
Bib
Impact Factor:
1.6
A Symmetry Index for Graphs
Mowshowitz A., Dehmer M.
Symmetry: Culture and Science, Vol. 21 (4), 2010
137 Link
Bib
A Large Scale Analysis of Information-Theoretic Network Complexity Measures Using Chemical Structures
DehmerM., Barbarini N., Varmuza K., Graber A.
PLoS ONE, Vol. 4 (12), 2009, e8057
142 Link
Bib
Impact Factor:
4.351
Structural Information Content of Networks: Graph Entropy based on Local Vertex Functionals
Dehmer M., Emmert-Streib F.
Computational Biology and Chemistry, Vol. 32 (2), 2008, 131-138
150 Link
Bib
Impact Factor:
1.37
The Structural Information Content of Chemical Networks
Dehmer M., Emmert-Streib F.
Zeitschrift für Naturforschung A, Vol. 63(3-4), 2008, 155-158
151 Link
Bib
Impact Factor:
0.63
Entropy Bounds for Hierarchical Molecular Networks
Dehmer M., Borgert S., Emmert-Streib F.
PLoS ONE, Vol. 3 (8), 2008, e3079
152 Link
Bib
Impact Factor:
4.351
Information-theoretic Concepts for the Analysis of Complex Networks
Dehmer M.
Applied Artificial Intelligence, Vol. 22, 2008, 684-706
153 Link
Bib
Impact Factor:
0.58